Help
The full MolClass workflow, from a raw SDF file to a published prediction model you can query. Every screen below is redrawn from the real page’s layout to walk through what you’ll see — it’s an illustration, not a live screenshot, so the exact numbers and colors will differ from your session.
Upload a compound library
Start at Upload. Drop in an SDF file; MolClass analyzes every record, lets you pick which fields become model targets, and then imports it durably — one molecule at a time, so a single bad record never rolls back the rest. A live progress bar shows records loaded, succeeded, and skipped as the import runs.
Drop your SDF file here
or click to browse
Loading molecules
Configure a model
In Model Creation, pick from datasets that already have a usable target — a property with 2 to 100 distinct classes. Click a dataset’s ID to choose the target property, feature profile (CDK descriptors alone, or JUMBO with added fingerprints), and algorithm (RandomForest, SMO, KNN, Ensemble, and more), then start the build.
Review and approve the build
Once the worker finishes training, the build lands in Model Review as AWAITING_APPROVAL— nothing is ever auto-published. Open a build to see its full holdout evidence (accuracy, AUC, F1, confusion matrix) and either approve it into the published registry or reject it.
Mitochondrial uncoupler
RandomForest · awaiting approval
Model 118
SMO · awaiting approval
Find molecules and run predictions
Search has two tabs. Structure searchlooks up the registry by ID, name, InChIKey, SMILES, or a drawn structure, and shows a thumbnail per match — select any number of them and hit “Predict selected”. Model & molecule search is where that selection lands: pick one or more published models and run every molecule against every model at once.
Read the result — and its history
Every prediction reports a predicted class, a confidence score, and an applicability-domain flag (whether the molecule’s scaffold actually resembles the training set). Click any molecule to open its own page, which keeps a running history of every prediction ever made against it, and lets you queue up new ones against any other published model.
Caffeine
#4711
Where things live, if you get lost
- /upload — bring compounds in.
- /model-creation — turn a dataset into a training run.
- /model-review — approve or reject a finished build.
- /search — look up molecules, or predict against published models.
- /dataset-review — audit import health and model eligibility across every dataset.
Still stuck? See About for how to reach us.