Getting started

Help

The full MolClass workflow, from a raw SDF file to a published prediction model you can query. Every screen below is redrawn from the real page’s layout to walk through what you’ll see — it’s an illustration, not a live screenshot, so the exact numbers and colors will differ from your session.

1

Upload a compound library

Start at Upload. Drop in an SDF file; MolClass analyzes every record, lets you pick which fields become model targets, and then imports it durably — one molecule at a time, so a single bad record never rolls back the rest. A live progress bar shows records loaded, succeeded, and skipped as the import runs.

molclass.local/upload

Drop your SDF file here

or click to browse

Loading molecules

6,412 of 8,014 records loaded80%
2

Configure a model

In Model Creation, pick from datasets that already have a usable target — a property with 2 to 100 distinct classes. Click a dataset’s ID to choose the target property, feature profile (CDK descriptors alone, or JUMBO with added fingerprints), and algorithm (RandomForest, SMO, KNN, Ensemble, and more), then start the build.

molclass.local/model-creation
IDWhat is this dataset?Action
ID 91Tox21 nuclear-receptor screenConfigure
ID 87Kinase inhibition panelConfigure
3

Review and approve the build

Once the worker finishes training, the build lands in Model Review as AWAITING_APPROVAL— nothing is ever auto-published. Open a build to see its full holdout evidence (accuracy, AUC, F1, confusion matrix) and either approve it into the published registry or reject it.

molclass.local/model-review

Mitochondrial uncoupler

RandomForest · awaiting approval

ApproveReject

Model 118

SMO · awaiting approval

ApproveReject
4

Find molecules and run predictions

Search has two tabs. Structure searchlooks up the registry by ID, name, InChIKey, SMILES, or a drawn structure, and shows a thumbnail per match — select any number of them and hit “Predict selected”. Model & molecule search is where that selection lands: pick one or more published models and run every molecule against every model at once.

molclass.local/search?tab=models
Structure searchModel & molecule search
Caffeine
Aspirin
Run 2 molecules against 1 model
5

Read the result — and its history

Every prediction reports a predicted class, a confidence score, and an applicability-domain flag (whether the molecule’s scaffold actually resembles the training set). Click any molecule to open its own page, which keeps a running history of every prediction ever made against it, and lets you queue up new ones against any other published model.

molclass.local/molecules/4711

Caffeine

#4711

active81.2% confidence
In domain

Where things live, if you get lost

  • /upload — bring compounds in.
  • /model-creation — turn a dataset into a training run.
  • /model-review — approve or reject a finished build.
  • /search — look up molecules, or predict against published models.
  • /dataset-review — audit import health and model eligibility across every dataset.

Still stuck? See About for how to reach us.